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Allow me to introduce you to Scrivener. Scrivener is a word processor which allows you to create unlimited documents within a single project, and organize them into folders. You can have each b...
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Source: https://writers.stackexchange.com/a/12776 License name: CC BY-SA 3.0 License URL: https://creativecommons.org/licenses/by-sa/3.0/
#3: Attribution notice added
Source: https://writers.stackexchange.com/a/12776 License name: CC BY-SA 3.0 License URL: https://creativecommons.org/licenses/by-sa/3.0/
#2: Initial revision
Allow me to introduce you to [Scrivener.](http://literatureandlatte.com/) Scrivener is a word processor which allows you to create unlimited documents within a single project, and organize them into folders. You can have each book project as a folder, and within a book folder have multiple subfolders. You can see all your documents in a nice document tree in a side pane. You can drag items around from here to there, link documents within the project, tag documents for easy searching, and even display your documents as note cards on a cork board. You can also have two documents open at once, top/bottom or side by side, so you can look at a reference document while typing in another document. Scrivener exports as Word and text, so you're not stuck in a proprietary format, and it has a full-screen environment if you need to cut out distractions. $45 for Mac OSX, $40 for Windows. You can test it full-featured for 30 days. You can search for other discussions of Scrivener [on this SE](https://writers.stackexchange.com/search?q=scrivener), including a lot of cheerleading from me. :) In fact, I picked up this answer from another similar question: [What is a good tool for organizing story notes?](https://writers.stackexchange.com/questions/10412/what-is-a-good-tool-for-organizing-story-notes) I also use Excel to keep track of scene details, and some people use mindmap software (although I find that kind of interface overwhelming).