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I would check with your department on the standard structure of a thesis. Typically these questions are addressed in the relative documentation. If your thesis includes a methods section, then, by...
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#4: Attribution notice removed
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System
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2019-12-18T21:34:21Z (almost 5 years ago)
Source: https://writers.stackexchange.com/a/40852 License name: CC BY-SA 3.0 License URL: https://creativecommons.org/licenses/by-sa/3.0/
#3: Attribution notice added
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System
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2019-12-08T10:23:48Z (almost 5 years ago)
Source: https://writers.stackexchange.com/a/40852 License name: CC BY-SA 3.0 License URL: https://creativecommons.org/licenses/by-sa/3.0/
#2: Initial revision
I would check with your department on the standard structure of a thesis. Typically these questions are addressed in the relative documentation. If your thesis includes a methods section, then, by all means, list your software tools there, including how you used them, and make sure you conclude each mention with a correct (and lasting) reference in the bibliography. If your thesis does not include an explicit methods section, then mention the tool when you first use it, describe its function, and add a bibliographical reference; in later sections you can write "we use software XYZ for the task (see section XX and reference YY)" where you refer both to your description on how to use the software tool, and to the bibliographical reference. Note that if you use your software tool in a different manner you should describe its alternative use. Please, do **not** include Windows, Linux, or any operative system as a software tool if they are just a generic platform on which you are running your software. The same goes for any other tool (software or not) that is not specific and necessary for your research.
#1: Imported from external source
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System
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2018-12-21T23:47:07Z (almost 6 years ago)
Original score: 5