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I would have no problem putting appendices in "logical" order. An appendix is referred to out-of-context or out of order anyway, so what difference does it make if your footnote sends the reader to...
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#4: Attribution notice removed
Source: https://writers.stackexchange.com/a/5244 License name: CC BY-SA 3.0 License URL: https://creativecommons.org/licenses/by-sa/3.0/
#3: Attribution notice added
Source: https://writers.stackexchange.com/a/5244 License name: CC BY-SA 3.0 License URL: https://creativecommons.org/licenses/by-sa/3.0/