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I love Scrivener for this kind of thing. You can put each thought onto an individual page, and then drag them around as you see fit. It even has a virtual corkboard screen so you can see many indiv...
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#4: Attribution notice removed
Source: https://writers.stackexchange.com/a/10328 License name: CC BY-SA 3.0 License URL: https://creativecommons.org/licenses/by-sa/3.0/
#3: Attribution notice added
Source: https://writers.stackexchange.com/a/10328 License name: CC BY-SA 3.0 License URL: https://creativecommons.org/licenses/by-sa/3.0/