How do I implement a scholarly citation style in an online format?

I am part of a group starting an online, submissions-based journal of critical writing specific to my field. As the writing will be academic, we will need a formal citation process. We have decided to go with Chicago. However, I am having a tough time finding specific information about using Chicago citations in an online format.

More specifically, I am not sure how to adapt Chicago style to an online format. This style was created with the typed and printed page in mind, so I was wondering if there are any guidelines or commonly accepted tweaks to traditional Chicago style that make it more successful in an online format.

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How do I implement a scholarly citation style in an online format?

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